X-probe
Advanced XFEL and Synchrotron based Probes of Protein Structure and Dynamics
Coordinator University of Hamburg ; XTAL CONCEPTS GMBH ; EUROPEAN SYNCHROTRON RADIATION FACILITY ; MOLIROM SRL ; Lunds universitet ; CNRS - Institut des Sciences Biologiques ; University of Gothenburg ; Sapienza University of Rome ; ASTRAZENECA AB
Grant period 2015-01-01 - 2018-12-31
Funding body European Union
Call number H2020-MSCA-ITN-2014
Grant number 637295
Identifier G:(EU-Grant)637295
Note: This cross-disciplinary Marie Curie Innovative Training Network builds upon the transformative opportunities created by existing X-ray sources and new sources soon to be operative in Europe. These opportunities include using ultrafast X-ray sources to extract time-dependent structural information from proteins; and revolutionary possibilities created by X-ray Free Electron Laser radiation for an entirely new regime of pre-damage serial femtosecond crystallography. No lag should exist between building new sources and training the next generation of scientists well versed in using these facilities. Our research training will yield new scientific insights on fundamental properties of protein structure and dynamics: one of the most challenging problems in structural biology; and technological advancements in diverse fields from pharmacology to nanotechnology.
X-probe creates close interdisciplinary collaboration between structural biologists, physical chemists, beamline engineers, software developers, and industrial partners. The rapidly changing state-of-the-art demands that young researchers are trained to meet these new experimental, technical and analysis challenges at the forefront of structural biology and photochemistry. X-probe’s interdisciplinary and intersectorial training network incorporates four leading European X-ray facilities (ESRF, MAXIV Laboratory, European XFEL, SwissFEL); three academic laboratories at the forefront developing X-ray tools to probe protein dynamics; and both large and small industrial partners. Four principal scientists in X-probe are female. X-probe builds close cooperation between traditionally separate fields of research at the very cutting edge of structural biology and creates a visionary training network that would not be possible within any of the individual partner states.
Recent Publications All known publications ... Download: BibTeX | EndNote XML , Text | RIS |
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Journal Article
Dods, R. ; Båth, P. ; Morozov, D. ; Gagnér, V. A. ; Arnlund, D. ; Luk, H. L. ; Kübel, J. ; Maj, M. ; Vallejos, A. ; Wickstrand, C. ; Bosman, R. Extern * ; Beyerlein, K. R. CFEL * MPG * ; Nelson, G. Extern * ; Liang, M. ; Milathianaki, D. ; Robinson, J. ; Harimoorthy, R. Extern * EMBL * ; Berntsen, P. Extern * XFEL.EU * ; Malmerberg, E. ; Johansson, L. ; Andersson, R. Extern * XFEL.EU * ; Carbajo, S. DESY * ; Claesson, E. Extern * EMBL * ; Smith, C. Extern * XFEL.EU * ; Dahl, P. Extern * XFEL.EU * ; Hammarin, G. ; Hunter, M. Extern * XFEL.EU * ; Li, C. CFEL * XFEL.EU * DESY * ; Lisova, S. Extern * XFEL.EU * ; Royant, A. Extern * EMBL * ; Safari, C. Extern * XFEL.EU * ; Sharma, A. ; Williams, G. Extern * XFEL.EU * ; Yefanov, O. CFEL * EMBL * DESY * ; Westenhoff, S. Extern * EMBL * ; Davidsson, J. ; DePonte, D. P. Extern * ; Boutet, S. Extern * ; Barty, A. CFEL * DESY * ; Katona, G. Extern * EMBL * ; Groenhof, G. Extern * XFEL.EU * ; Branden, G. Extern * EMBL * ; Neutze, R. (Corresponding author) Extern * XFEL.EU *
Ultrafast structural changes within a photosynthetic reaction centre
Nature <London> / Physical science 589 , 310 - 314 (2021 ) [10.1038/s41586-020-3000-7 ] 2021
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Preprint
Pandey, S. Extern * XFEL.EU * ; Bean, R. XFEL.EU * ; Sato, T. XFEL.EU * ; Poudyal, I. Extern * XFEL.EU * ; Bielecki, J. XFEL.EU * ; Cruz Villarreal, J. ; Yefanov, O. CFEL * XFEL.EU * DESY * ; Mariani, V. XFEL.EU * DESY * ; White, T. A. ; Kupitz, C. Extern * XFEL.EU * ; Hunter, M. XFEL.EU * ; Abdellatif, M. H. ; Bajt, S. CFEL * XFEL.EU * DESY * ; Bondar, V. XFEL.EU * ; Echelmeier, A. ; Doppler, D. Extern * XFEL.EU * ; Emons, M. XFEL.EU * ; Frank, M. ; Fromme, R. ; Gevorkov, Y. ; Giovanetti, G. ; Jiang, M. XFEL.EU * ; Kim, D. ; Kim, Y. XFEL.EU * ; Kirkwood, H. ; Klimovskaia, A. XFEL.EU * ; Knoska, J. Extern * XFEL.EU * ; Koua, F. H. M. ; Letrun, R. ; Lisova, S. Extern * XFEL.EU * ; Maia, L. XFEL.EU * ; Mazalova, V. ; Meza, D. Extern * XFEL.EU * ; Michelat, T. ; Ourmazd, A. ; Palmer, G. XFEL.EU * DESY * ; Ramilli, M. XFEL.EU * ; Schubert, R. ; Schwander, P. Extern * XFEL.EU * ; Silenzi, A. XFEL.EU * ; Sztuk-Dambietz, J. XFEL.EU * ; Tolstikova, A. XFEL.EU * DESY * ; Chapman, H. N. CFEL * XFEL.EU * DESY * ; Ros, A. ; Barty, A. XFEL.EU * DESY * ; Fromme, P. CFEL * Extern * ; Mancuso, A. P. Extern * XFEL.EU * ; Schmidt, M. (Corresponding author) Extern * XFEL.EU *
Direct Observation of the Mechanism of Antibiotic Resistance by Mix-and-Inject at the European XFEL
biorXiv (2020 ) [10.1101/2020.11.24.396689 ] 2020
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Journal Article
Gevorkov, Y. (Corresponding author) CFEL * DESY * ; Barty, A. CFEL * DESY * ; Brehm, W. CFEL * DESY * ; White, T. A. CFEL * DESY * ; Tolstikova, A. CFEL * DESY * ; Wiedorn, M. O. CFEL * XFEL.EU * ; Meents, A. CFEL * DESY * ; Grigat, R.-R. ; Chapman, H. N. CFEL * DESY * ; Yefanov, O. CFEL * DESY *
pinkIndexer – a universal indexer for pink-beam X-ray and electron diffraction snapshots
Acta crystallographica / Section A 76 (2 ), 121 - 131 (2020 ) [10.1107/S2053273319015559 ] 2020
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Journal Article
Yefanov, O. (Corresponding author) CFEL * EMBL * DESY * ; Oberthür, D. CFEL * DESY * ; Bean, R. XFEL.EU * ; Wiedorn, M. O. CFEL * ; Knoska, J. CFEL * DESY * ; Pena, G. CFEL * DESY * ; Awel, S. CFEL * DESY * ; Gumprecht, L. CFEL * DESY * ; Domaracky, M. CFEL * DESY * ; Sarrou, I. CFEL * DESY * ; Lourdu Xavier, P. CFEL * DESY * ; Metz, M. CFEL * DESY * ; Bajt, S. CFEL * DESY * ; Mariani, V. CFEL * DESY * ; Gevorkov, Y. CFEL * DESY * ; White, T. CFEL * DESY * ; Tolstikova, A. CFEL * DESY * ; Villanueva-Perez, P. CFEL * DESY * ; Seuring, C. CFEL * ; Aplin, S. CFEL * ; Estillore, A. CFEL * DESY * ; Küpper, J. CFEL * DESY * ; Klujev, A. CFEL * DESY * ; Kuhn, M. DESY * ; Laurus, T. CFEL * DESY * ; Graafsma, H. CFEL * DESY * ; Monteiro, D. Extern * ; Trebbin, M. XFEL.EU * ; Maia, F. Extern * ; Cruz-Mazo, F. Extern * ; Ganan-Calvo, A. Extern * ; Heymann, M. Extern * ; Darmanin, C. ; Abbey, B. Extern * ; Schmidt, M. Extern * XFEL.EU * ; Fromme, P. CFEL * Extern * ; Giewekemeyer, K. Extern * XFEL.EU * ; Sikorski, M. XFEL.EU * ; Graceffa, R. XFEL.EU * ; Vagovic, P. CFEL * DESY * ; Kluyver, T. XFEL.EU * ; Bergemann, M. Extern * XFEL.EU * ; Fangohr, H. XFEL.EU * ; Sztuk-Dambietz, J. XFEL.EU * ; Hauf, S. XFEL.EU * ; Raab, N. XFEL.EU * ; Bondar, V. XFEL.EU * ; Mancuso, A. P. Extern * XFEL.EU * EMBL * ; Chapman, H. CFEL * DESY * ; Barty, A. CFEL * DESY *
Evaluation of serial crystallographic structure determination within megahertz pulse trains
Structural dynamics 6 (6 ), 064702 - (2019 ) [10.1063/1.5124387 ] 2019
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Journal Article
Pandey, S. Extern * XFEL.EU * ; Bean, R. XFEL.EU * ; Sato, T. CFEL * DESY * ; Poudyal, I. Extern * XFEL.EU * ; Bielecki, J. XFEL.EU * ; Cruz Villarreal, J. ; Yefanov, O. CFEL * EMBL * DESY * ; Mariani, V. CFEL * DESY * ; White, T. A. CFEL * DESY * ; Kupitz, C. Extern * XFEL.EU * ; Hunter, M. Extern * XFEL.EU * ; Abdellatif, M. H. CFEL * ; Bajt, S. CFEL * DESY * ; Bondar, V. XFEL.EU * ; Echelmeier, A. ; Doppler, D. Extern * XFEL.EU * ; Emons, M. XFEL.EU * ; Frank, M. ; Fromme, R. ; Gevorkov, Y. CFEL * ; Giovanetti, G. ; Jiang, M. XFEL.EU * ; Kim, D. ; Kim, Y. XFEL.EU * ; Kirkwood, H. ; Klimovskaia, A. XFEL.EU * ; Knoska, J. CFEL * XFEL.EU * DESY * ; Koua, F. H. M. CFEL * ; Letrun, R. XFEL.EU * ; Lisova, S. Extern * XFEL.EU * ; Maia, L. XFEL.EU * ; Mazalova, V. CFEL * DESY * ; Meza, D. Extern * XFEL.EU * ; Michelat, T. ; Ourmazd, A. ; Palmer, G. XFEL.EU * ; Ramilli, M. XFEL.EU * ; Schubert, R. ; Schwander, P. Extern * XFEL.EU * ; Silenzi, A. XFEL.EU * ; Sztuk-Dambietz, J. XFEL.EU * ; Tolstikova, A. CFEL * DESY * ; Chapman, H. N. CFEL * DESY * ; Ros, A. ; Barty, A. CFEL * DESY * ; Fromme, P. CFEL * Extern * ; Mancuso, A. P. Extern * XFEL.EU * EMBL * ; Schmidt, M. (Corresponding author)
Time-resolved serial femtosecond crystallography at the European XFEL
Nature methods 2020 (17 ), 73–78 (2019 ) [10.1038/s41592-019-0628-z ] 2019
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Journal Article
Gevorkov, Y. (Corresponding author) CFEL * DESY * ; Yefanov, O. CFEL * EMBL * DESY * ; Barty, A. CFEL * DESY * ; White, T. A. CFEL * DESY * ; Mariani, V. CFEL * DESY * ; Brehm, W. CFEL * DESY * ; Tolstikova, A. CFEL * DESY * ; Grigat, R.-R. ; Chapman, H. N. CFEL * DESY *
XGANDALF – extended gradient descent algorithm for lattice finding
Acta crystallographica / A 75 (5 ), 694 - 704 (2019 ) [10.1107/S2053273319010593 ] 2019
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Journal Article
Tolstikova, A. (Corresponding author) CFEL * DESY * ; Levantino, M. ; Yefanov, O. CFEL * EMBL * DESY * ; Hennicke, V. CFEL * DESY * ; Fischer, P. CFEL * DESY * ; Meyer, J. DESY * ; Mozzanica, A. ; Redford, S. ; Crosas, E. EMBL * DESY * ; Opara, N. L. ; Barthelmess, M. CFEL * DESY * ; Lieske, J. CFEL * EMBL * DESY * ; Oberthür, D. CFEL * DESY * ; Wator, E. ; Mohacsi, I. CFEL * XFEL.EU * ; Wulff, M. Extern * XFEL.EU * ; Schmitt, B. Extern * ; Chapman, H. N. CFEL * DESY * ; Meents, A. (Corresponding author) CFEL * DESY *
1 kHz fixed-target serial crystallography using a multilayer monochromator and an integrating pixel detector
IUCrJ 6 (5 ), 927 - 937 (2019 ) [10.1107/S205225251900914X ] 2019
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Journal Article
Wiedorn, M. O. (Corresponding author) CFEL * ; Oberthür, D. CFEL * DESY * ; Bean, R. XFEL.EU * ; et al
Megahertz serial crystallography
Nature Communications 9 (1 ), 4025 (2018 ) [10.1038/s41467-018-06156-7 ] 2018
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Journal Article
Zhang, H. ; Han, G. W. ; Batyuk, A. ; Ishchenko, A. ; White, K. L. ; Patel, N. ; Sadybekov, A. ; Zamlynny, B. ; Rudd, M. T. ; Hollenstein, K. ; Tolstikova, A. CFEL * ; White, T. A. CFEL * DESY * ; Hunter, M. S. ; Weierstall, U. Extern * ; Liu, W. ; Babaoglu, K. ; Moore, E. L. ; Katz, R. D. ; Shipman, J. M. ; Garcia-Calvo, M. ; Sharma, S. ; Sheth, P. ; Soisson, S. M. ; Stevens, R. C. ; Katritch, V. ; Cherezov, V. (Corresponding author)
Structural basis for selectivity and diversity in angiotensin II receptors
Nature <London> 544 (7650 ), 327 - 332 (2017 ) [10.1038/nature22035 ] 2017
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Journal Article
Meents, A. (Corresponding author) CFEL * DESY * ; Wiedorn, M. O. CFEL * DESY * ; Srajer, V. ; Henning, R. ; Sarrou, I. CFEL * ; Bergtholdt, J. CFEL * ; Barthelmess, M. CFEL * ; Reinke, P. Y. A. ; Dierksmeyer, D. CFEL * ; Tolstikova, A. CFEL * ; Schaible, S. Extern * ; Messerschmidt, M. XFEL.EU * ; Ogata, C. M. ; Kissick, D. J. ; Taft, M. H. ; Manstein, D. J. ; Lieske, J. DESY * ; Oberthür, D. CFEL * DESY * ; Fischetti, R. F. ; Chapman, H. N. CFEL * DESY *
Pink-beam serial crystallography
Nature Communications 8 (1 ), 1281 (2017 ) [10.1038/s41467-017-01417-3 ] 2017
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All known publications ... Download: BibTeX | EndNote XML , Text | RIS |