Journal Article

PUBDB-2024-05629

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Community recommendations on cryoEM data archiving and validation

Kleywegt, G. J. (Corresponding author) ; Adams, P. D. ; Butcher, S. J. ; Lawson, C. L. ; Rohou, A. ; Rosenthal, P. B. ; Subramaniam, S. ; Topf, M.Extern*CSSB* ; Abbott, S. ; Baldwin, P. R. ; Berrisford, J. M. ; Bricogne, G. ; Choudhary, P. ; Croll, T. I. ; Danev, R. ; Ganesan, S. J. ; Grant, T. ; Gutmanas, A. ; Henderson, R. ; Heymann, J. B. ; Huiskonen, J. T. ; Istrate, A. ; Kato, T. ; Lander, G. C. ; Lok, S.-M. ; Ludtke, S. J. ; Murshudov, G. N. ; Pye, R. ; Pintilie, G. D. ; Richardson, J. S. ; Sachse, C. ; Salih, O. ; Scheres, S. H. W. ; Schroeder, G. F. ; Sorzano, C. O. S. ; Stagg, S. M. ; Wang, Z. ; Warshamanage, R. ; Westbrook, J. D. ; Winn, M. D. ; Young, J. Y. ; Burley, S. K. ; Hoch, J. C. ; Kurisu, G. ; Morris, K. ; Patwardhan, A. ; Velankar, S.

2024
[Verlag nicht ermittelbar] Chester

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Please use a persistent id in citations: doi:10.1107/S2052252524001246  doi:10.3204/PUBDB-2024-05629

Abstract: In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for the deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop's motivation and history, the topics discussed, and the resulting consensus recommendations. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.Keywords: cryogenic-specimen electron microscopy; data archiving; validation; quality control; Electron Microscopy Data Bank; Protein Data Bank; single-particle cryoEM; databases; bioinformatics; structure determination.

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Contributing Institute(s):

1. CSSB - Leibniz-Institut für Experimentelle Virologie (LIV) / UKE - Maya Topf (CSSB-LIV/UKE-MT)

Research Program(s):

1. 899 - ohne Topic (POF4-899) (POF4-899)

Experiment(s):

1. No specific instrument

Appears in the scientific report 2024

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