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000613802 1001_ $$00000-0002-4670-0331$$aKleywegt, Gerard J.$$b0$$eCorresponding author
000613802 245__ $$aCommunity recommendations on cryoEM data archiving and validation
000613802 260__ $$aChester$$b[Verlag nicht ermittelbar]$$c2024
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000613802 520__ $$aIn January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for the deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop's motivation and history, the topics discussed, and the resulting consensus recommendations. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.Keywords: cryogenic-specimen electron microscopy; data archiving; validation; quality control; Electron Microscopy Data Bank; Protein Data Bank; single-particle cryoEM; databases; bioinformatics; structure determination.
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000613802 999C5 $$1Abdul Ajees$$2Crossref$$9-- missing cx lookup --$$a10.1038/nature05258$$p221 -$$tNature$$v444$$y2006
000613802 999C5 $$1Baldwin$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.pbiomolbio.2020.06.003$$p53 -$$tProg. Biophys. Mol. Biol.$$v160$$y2021
000613802 999C5 $$1Barad$$2Crossref$$9-- missing cx lookup --$$a10.1038/nmeth.3541$$p943 -$$tNat. Methods$$v12$$y2015
000613802 999C5 $$1Berman$$2Crossref$$9-- missing cx lookup --$$a10.1038/nsb1203-980$$p980 -$$tNat. Struct. Mol. Biol.$$v10$$y2003
000613802 999C5 $$1Borrell$$2Crossref$$9-- missing cx lookup --$$a10.1038/462970a$$p970 -$$tNature$$v462$$y2009
000613802 999C5 $$1Brändén$$2Crossref$$9-- missing cx lookup --$$a10.1038/343687a0$$p687 -$$tNature$$v343$$y1990
000613802 999C5 $$1Brünger$$2Crossref$$9-- missing cx lookup --$$a10.1038/355472a0$$p472 -$$tNature$$v355$$y1992
000613802 999C5 $$1Cardone$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.jsb.2013.08.002$$p226 -$$tJ. Struct. Biol.$$v184$$y2013
000613802 999C5 $$1Chen$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.ultramic.2013.06.004$$p24 -$$tUltramicroscopy$$v135$$y2013
000613802 999C5 $$1Davis$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkh398$$pW615 -$$tNucleic Acids Res.$$v32$$y2004
000613802 999C5 $$1Gore$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.str.2017.10.009$$p1916 -$$tStructure$$v25$$y2017
000613802 999C5 $$1Gore$$2Crossref$$9-- missing cx lookup --$$a10.1107/S0907444911050359$$p478 -$$tActa Cryst. D$$v68$$y2012
000613802 999C5 $$1Heel$$2Crossref$$oHeel 2013$$y2013
000613802 999C5 $$1Henderson$$2Crossref$$9-- missing cx lookup --$$a10.1073/pnas.1314449110$$p18037 -$$tProc. Natl Acad. Sci. USA$$v110$$y2013
000613802 999C5 $$1Henderson$$2Crossref$$9-- missing cx lookup --$$a10.1016/S0022-2836(05)80271-2$$p899 -$$tJ. Mol. Biol.$$v213$$y1990
000613802 999C5 $$1Henderson$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.str.2011.12.014$$p205 -$$tStructure$$v20$$y2012
000613802 999C5 $$1Hooft$$2Crossref$$9-- missing cx lookup --$$a10.1038/381272a0$$p272 -$$tNature$$v381$$y1996
000613802 999C5 $$1Iudin$$2Crossref$$9-- missing cx lookup --$$a10.1038/nmeth.3806$$p387 -$$tNat. Methods$$v13$$y2016
000613802 999C5 $$1Iudin$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkac1062$$pD1503 -$$tNucleic Acids Res.$$v51$$y2023
000613802 999C5 $$1Jones$$2Crossref$$9-- missing cx lookup --$$a10.1107/S0108767390010224$$p110 -$$tActa Cryst. A$$v47$$y1991
000613802 999C5 $$1Joseph$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.ymeth.2016.03.007$$p42 -$$tMethods$$v100$$y2016
000613802 999C5 $$1Jumper$$2Crossref$$9-- missing cx lookup --$$a10.1038/s41586-021-03819-2$$p583 -$$tNature$$v596$$y2021
000613802 999C5 $$1Kleywegt$$2Crossref$$9-- missing cx lookup --$$a10.1006/jmbi.1997.1309$$p371 -$$tJ. Mol. Biol.$$v273$$y1997
000613802 999C5 $$1Kleywegt$$2Crossref$$9-- missing cx lookup --$$a10.1107/S090744490900081X$$p134 -$$tActa Cryst. D$$v65$$y2009
000613802 999C5 $$1Kleywegt$$2Crossref$$9-- missing cx lookup --$$a10.1107/S0907444904013253$$p2240 -$$tActa Cryst. D$$v60$$y2004
000613802 999C5 $$1Kleywegt$$2Crossref$$9-- missing cx lookup --$$a10.1016/S0969-2126(01)00187-3$$p535 -$$tStructure$$v3$$y1995
000613802 999C5 $$1Kleywegt$$2Crossref$$9-- missing cx lookup --$$a10.1016/S0076-6879(97)77013-7$$p208 -$$tMethods Enzymol.$$v277$$y1997
000613802 999C5 $$1Kleywegt$$2Crossref$$9-- missing cx lookup --$$a10.1107/S0907444998007100$$p1119 -$$tActa Cryst. D$$v54$$y1998
000613802 999C5 $$1Kucukelbir$$2Crossref$$9-- missing cx lookup --$$a10.1038/nmeth.2727$$p63 -$$tNat. Methods$$v11$$y2014
000613802 999C5 $$1Kühlbrandt$$2Crossref$$9-- missing cx lookup --$$a10.1126/science.1251652$$p1443 -$$tScience$$v343$$y2014
000613802 999C5 $$1Kuszewski$$2Crossref$$9-- missing cx lookup --$$a10.1002/pro.5560050609$$p1067 -$$tProtein Sci.$$v5$$y1996
000613802 999C5 $$1Kuszewski$$2Crossref$$9-- missing cx lookup --$$a10.1006/jmre.1997.1116$$p171 -$$tJ. Magn. Reson.$$v125$$y1997
000613802 999C5 $$1Lagerstedt$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.jsb.2013.09.021$$p173 -$$tJ. Struct. Biol.$$v184$$y2013
000613802 999C5 $$1Laskowski$$2Crossref$$9-- missing cx lookup --$$a10.1107/S0021889892009944$$p283 -$$tJ. Appl. Cryst.$$v26$$y1993
000613802 999C5 $$1Lawson$$2Crossref$$9-- missing cx lookup --$$a10.1063/1.5138589$$p014701 -$$tStruct. Dyn.$$v7$$y2020
000613802 999C5 $$1Lawson$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.jsb.2018.10.004$$p523 -$$tJ. Struct. Biol.$$v204$$y2018
000613802 999C5 $$1Lawson$$2Crossref$$9-- missing cx lookup --$$a10.1038/s41592-020-01051-w$$p156 -$$tNat. Methods$$v18$$y2021
000613802 999C5 $$1Ludtke$$2Crossref$$9-- missing cx lookup --$$a10.1002/bip.22081$$p651 -$$tBiopolymers$$v97$$y2012
000613802 999C5 $$1Marabini$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.jsb.2015.04.003$$p348 -$$tJ. Struct. Biol.$$v190$$y2015
000613802 999C5 $$1Marabini$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.jsb.2016.02.008$$p156 -$$tJ. Struct. Biol.$$v194$$y2016
000613802 999C5 $$1Montelione$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.str.2013.07.021$$p1563 -$$tStructure$$v21$$y2013
000613802 999C5 $$1Naydenova$$2Crossref$$9-- missing cx lookup --$$a10.1038/s41467-017-00782-3$$p629 -$$tNat. Commun.$$v8$$y2017
000613802 999C5 $$1Nicholls$$2Crossref$$9-- missing cx lookup --$$a10.1107/S2059798318007313$$p492 -$$tActa Cryst. D$$v74$$y2018
000613802 999C5 $$1Patwardhan$$2Crossref$$9-- missing cx lookup --$$a10.1038/nsmb.2897$$p841 -$$tNat. Struct. Mol. Biol.$$v21$$y2014
000613802 999C5 $$1Patwardhan$$2Crossref$$9-- missing cx lookup --$$a10.1038/nsmb.2426$$p1203 -$$tNat. Struct. Mol. Biol.$$v19$$y2012
000613802 999C5 $$1Pintilie$$2Crossref$$9-- missing cx lookup --$$a10.1038/s41592-020-0731-1$$p328 -$$tNat. Methods$$v17$$y2020
000613802 999C5 $$1Prisant$$2Crossref$$9-- missing cx lookup --$$a10.1002/pro.3786$$p315 -$$tProtein Sci.$$v29$$y2020
000613802 999C5 $$1Read$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.str.2011.08.006$$p1395 -$$tStructure$$v19$$y2011
000613802 999C5 $$1Subramaniam$$2Crossref$$oSubramaniam 2013$$y2013
000613802 999C5 $$1Tagari$$2Crossref$$9-- missing cx lookup --$$a10.1016/S0968-0004(02)02176-X$$p589 -$$tTrends Biochem. Sci.$$v27$$y2002
000613802 999C5 $$1Tan$$2Crossref$$9-- missing cx lookup --$$a10.1038/nmeth.4347$$p793 -$$tNat. Methods$$v14$$y2017
000613802 999C5 $$1Terwilliger$$2Crossref$$9-- missing cx lookup --$$a10.1107/S205979832300102X$$p234 -$$tActa Cryst. D$$v79$$y2023
000613802 999C5 $$1Tunyasuvunakool$$2Crossref$$9-- missing cx lookup --$$a10.1038/s41586-021-03828-1$$p590 -$$tNature$$v596$$y2021
000613802 999C5 $$1Vallat$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.str.2018.03.011$$p894 -$$tStructure$$v26$$y2018
000613802 999C5 $$1Vilas$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.str.2017.12.018$$p337 -$$tStructure$$v26$$y2018
000613802 999C5 $$1Vilas$$2Crossref$$9-- missing cx lookup --$$a10.1038/s41467-019-13742-w$$p55 -$$tNat. Commun.$$v11$$y2020
000613802 999C5 $$1Wang$$2Crossref$$9-- missing cx lookup --$$a10.1107/S205979832200328X$$p542 -$$tActa Cryst. D$$v78$$y2022
000613802 999C5 $$1Warshamanage$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.jsb.2021.107826$$p107826 -$$tJ. Struct. Biol.$$v214$$y2021
000613802 999C5 $$2Crossref$$uWestbrook, J., Henrick, K., Ulrich, E. L. & Berman, H. M. (2005). International Tables for Crystallography, Vol. G, edited by S. R. Hall & B. McMahon, pp. 195-198. Springer: Dordrecht, The Netherlands.
000613802 999C5 $$2Crossref$$uwwPDB consortium. (2019). Nucleic Acids Res. 47, D520-D528.
000613802 999C5 $$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkad1019$$uwwPDB consortium. (2024). Nucleic Acids Res. 52, D456-D465.
000613802 999C5 $$1Young$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.str.2017.01.004$$p536 -$$tStructure$$v25$$y2017
000613802 999C5 $$1Zhu$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.jsb.2003.09.033$$p3 -$$tJ. Struct. Biol.$$v145$$y2004