001     613802
005     20250723172319.0
024 7 _ |a 10.1107/S2052252524001246
|2 doi
024 7 _ |a 10.3204/PUBDB-2024-05629
|2 datacite_doi
024 7 _ |a altmetric:156941897
|2 altmetric
024 7 _ |a pmid:38358351
|2 pmid
024 7 _ |a WOS:001207570700004
|2 WOS
024 7 _ |a openalex:W4389217803
|2 openalex
037 _ _ |a PUBDB-2024-05629
041 _ _ |a English
082 _ _ |a 530
100 1 _ |a Kleywegt, Gerard J.
|0 0000-0002-4670-0331
|b 0
|e Corresponding author
245 _ _ |a Community recommendations on cryoEM data archiving and validation
260 _ _ |a Chester
|c 2024
|b [Verlag nicht ermittelbar]
336 7 _ |a article
|2 DRIVER
336 7 _ |a Output Types/Journal article
|2 DataCite
336 7 _ |a Journal Article
|b journal
|m journal
|0 PUB:(DE-HGF)16
|s 1729243624_1213504
|2 PUB:(DE-HGF)
336 7 _ |a ARTICLE
|2 BibTeX
336 7 _ |a JOURNAL_ARTICLE
|2 ORCID
336 7 _ |a Journal Article
|0 0
|2 EndNote
520 _ _ |a In January 2020, a workshop was held at EMBL-EBI (Hinxton, UK) to discuss data requirements for the deposition and validation of cryoEM structures, with a focus on single-particle analysis. The meeting was attended by 47 experts in data processing, model building and refinement, validation, and archiving of such structures. This report describes the workshop's motivation and history, the topics discussed, and the resulting consensus recommendations. Some challenges for future methods-development efforts in this area are also highlighted, as is the implementation to date of some of the recommendations.Keywords: cryogenic-specimen electron microscopy; data archiving; validation; quality control; Electron Microscopy Data Bank; Protein Data Bank; single-particle cryoEM; databases; bioinformatics; structure determination.
536 _ _ |a 899 - ohne Topic (POF4-899)
|0 G:(DE-HGF)POF4-899
|c POF4-899
|f POF IV
|x 0
542 _ _ |i 2024-02-15
|2 Crossref
|u https://creativecommons.org/licenses/by/4.0/legalcode
542 _ _ |i 2024-02-15
|2 Crossref
|u https://creativecommons.org/licenses/by/4.0/legalcode
588 _ _ |a Dataset connected to CrossRef, Journals: bib-pubdb1.desy.de
693 _ _ |0 EXP:(DE-MLZ)NOSPEC-20140101
|5 EXP:(DE-MLZ)NOSPEC-20140101
|e No specific instrument
|x 0
700 1 _ |a Adams, Paul D.
|0 0000-0001-9333-8219
|b 1
700 1 _ |a Butcher, Sarah J.
|0 0000-0001-7060-5871
|b 2
700 1 _ |a Lawson, Catherine L.
|b 3
700 1 _ |a Rohou, Alexis
|0 0000-0002-3343-9621
|b 4
700 1 _ |a Rosenthal, Peter B.
|0 0000-0002-0387-2862
|b 5
700 1 _ |a Subramaniam, Sriram
|0 0000-0003-4231-4115
|b 6
700 1 _ |a Topf, Maya
|0 P:(DE-H253)PIP1094132
|b 7
700 1 _ |a Abbott, Sanja
|0 0000-0002-4781-9705
|b 8
700 1 _ |a Baldwin, Philip R.
|0 0000-0002-4202-4129
|b 9
700 1 _ |a Berrisford, John M.
|0 0000-0003-4442-5871
|b 10
700 1 _ |a Bricogne, Gérard
|0 0000-0002-0298-5507
|b 11
700 1 _ |a Choudhary, Preeti
|0 0000-0003-2340-3278
|b 12
700 1 _ |a Croll, Tristan I.
|0 0000-0002-3514-8377
|b 13
700 1 _ |a Danev, Radostin
|0 0000-0001-6406-8993
|b 14
700 1 _ |a Ganesan, Sai J.
|0 0000-0002-8335-2866
|b 15
700 1 _ |a Grant, Timothy
|0 0000-0002-4855-8703
|b 16
700 1 _ |a Gutmanas, Aleksandras
|0 0000-0001-6311-0176
|b 17
700 1 _ |a Henderson, Richard
|b 18
700 1 _ |a Heymann, J. Bernard
|0 0000-0002-8872-5326
|b 19
700 1 _ |a Huiskonen, Juha T.
|0 0000-0002-0348-7323
|b 20
700 1 _ |a Istrate, Andrei
|0 0000-0003-3385-497X
|b 21
700 1 _ |a Kato, Takayuki
|0 0000-0002-8879-6685
|b 22
700 1 _ |a Lander, Gabriel C.
|0 0000-0003-4921-1135
|b 23
700 1 _ |a Lok, Shee-Mei
|0 0000-0003-4631-8041
|b 24
700 1 _ |a Ludtke, Steven J.
|0 0000-0002-1903-1574
|b 25
700 1 _ |a Murshudov, Garib N.
|0 0000-0001-6483-3587
|b 26
700 1 _ |a Pye, Ryan
|0 0000-0003-3685-0368
|b 27
700 1 _ |a Pintilie, Grigore D.
|0 0000-0002-0848-5335
|b 28
700 1 _ |a Richardson, Jane S.
|0 0000-0002-3311-2944
|b 29
700 1 _ |a Sachse, Carsten
|b 30
700 1 _ |a Salih, Osman
|0 0000-0003-1654-0231
|b 31
700 1 _ |a Scheres, Sjors H. W.
|0 0000-0002-0462-6540
|b 32
700 1 _ |a Schroeder, Gunnar F.
|0 0000-0003-1803-5431
|b 33
700 1 _ |a Sorzano, Carlos Oscar S.
|0 0000-0002-9473-283X
|b 34
700 1 _ |a Stagg, Scott M.
|0 0000-0001-8855-4152
|b 35
700 1 _ |a Wang, Zhe
|b 36
700 1 _ |a Warshamanage, Rangana
|0 0000-0001-9756-0001
|b 37
700 1 _ |a Westbrook, John D.
|0 0000-0002-6686-5475
|b 38
700 1 _ |a Winn, Martyn D.
|0 0000-0003-0496-6796
|b 39
700 1 _ |a Young, Jasmine Y.
|0 0000-0001-8896-6878
|b 40
700 1 _ |a Burley, Stephen K.
|0 0000-0002-2487-9713
|b 41
700 1 _ |a Hoch, Jeffrey C.
|0 0000-0002-9230-2019
|b 42
700 1 _ |a Kurisu, Genji
|0 0000-0002-5354-0807
|b 43
700 1 _ |a Morris, Kyle
|0 0000-0002-1717-8134
|b 44
700 1 _ |a Patwardhan, Ardan
|0 0000-0001-7663-9028
|b 45
700 1 _ |a Velankar, Sameer
|0 0000-0002-8439-5964
|b 46
773 1 8 |a 10.1107/s2052252524001246
|b International Union of Crystallography (IUCr)
|d 2024-02-15
|n 2
|p 140-151
|3 journal-article
|2 Crossref
|t IUCrJ
|v 11
|y 2024
|x 2052-2525
773 _ _ |a 10.1107/S2052252524001246
|g Vol. 11, no. 2, p. 140 - 151
|0 PERI:(DE-600)2754953-7
|n 2
|p 140-151
|t IUCrJ
|v 11
|y 2024
|x 2052-2525
856 4 _ |y OpenAccess
|u https://bib-pubdb1.desy.de/record/613802/files/rq5010.pdf
856 4 _ |y OpenAccess
|x pdfa
|u https://bib-pubdb1.desy.de/record/613802/files/rq5010.pdf?subformat=pdfa
909 C O |o oai:bib-pubdb1.desy.de:613802
|p openaire
|p open_access
|p VDB
|p driver
|p dnbdelivery
910 1 _ |a Centre for Structural Systems Biology
|0 I:(DE-H253)_CSSB-20140311
|k CSSB
|b 7
|6 P:(DE-H253)PIP1094132
910 1 _ |a External Institute
|0 I:(DE-HGF)0
|k Extern
|b 7
|6 P:(DE-H253)PIP1094132
913 1 _ |a DE-HGF
|b Programmungebundene Forschung
|l ohne Programm
|1 G:(DE-HGF)POF4-890
|0 G:(DE-HGF)POF4-899
|3 G:(DE-HGF)POF4
|2 G:(DE-HGF)POF4-800
|4 G:(DE-HGF)POF
|v ohne Topic
|x 0
914 1 _ |y 2024
915 _ _ |a DBCoverage
|0 StatID:(DE-HGF)0160
|2 StatID
|b Essential Science Indicators
|d 2023-08-25
915 _ _ |a Creative Commons Attribution CC BY 4.0
|0 LIC:(DE-HGF)CCBY4
|2 HGFVOC
915 _ _ |a DBCoverage
|0 StatID:(DE-HGF)0501
|2 StatID
|b DOAJ Seal
|d 2023-03-08T13:58:02Z
915 _ _ |a DBCoverage
|0 StatID:(DE-HGF)0500
|2 StatID
|b DOAJ
|d 2023-03-08T13:58:02Z
915 _ _ |a WoS
|0 StatID:(DE-HGF)0113
|2 StatID
|b Science Citation Index Expanded
|d 2023-08-25
915 _ _ |a Fees
|0 StatID:(DE-HGF)0700
|2 StatID
|d 2023-08-25
915 _ _ |a OpenAccess
|0 StatID:(DE-HGF)0510
|2 StatID
915 _ _ |a Peer Review
|0 StatID:(DE-HGF)0030
|2 StatID
|b DOAJ : Anonymous peer review
|d 2023-03-08T13:58:02Z
915 _ _ |a Article Processing Charges
|0 StatID:(DE-HGF)0561
|2 StatID
|d 2023-08-25
915 _ _ |a JCR
|0 StatID:(DE-HGF)0100
|2 StatID
|b IUCRJ : 2022
|d 2025-01-07
915 _ _ |a DBCoverage
|0 StatID:(DE-HGF)0200
|2 StatID
|b SCOPUS
|d 2025-01-07
915 _ _ |a DBCoverage
|0 StatID:(DE-HGF)0300
|2 StatID
|b Medline
|d 2025-01-07
915 _ _ |a DBCoverage
|0 StatID:(DE-HGF)0199
|2 StatID
|b Clarivate Analytics Master Journal List
|d 2025-01-07
915 _ _ |a DBCoverage
|0 StatID:(DE-HGF)1150
|2 StatID
|b Current Contents - Physical, Chemical and Earth Sciences
|d 2025-01-07
915 _ _ |a DBCoverage
|0 StatID:(DE-HGF)0150
|2 StatID
|b Web of Science Core Collection
|d 2025-01-07
915 _ _ |a IF < 5
|0 StatID:(DE-HGF)9900
|2 StatID
|d 2025-01-07
920 1 _ |0 I:(DE-H253)CSSB-LIV_UKE-MT-20220525
|k CSSB-LIV/UKE-MT
|l CSSB - Leibniz-Institut für Experimentelle Virologie (LIV) / UKE - Maya Topf
|x 0
980 _ _ |a journal
980 _ _ |a VDB
980 _ _ |a UNRESTRICTED
980 _ _ |a I:(DE-H253)CSSB-LIV_UKE-MT-20220525
980 1 _ |a FullTexts
999 C 5 |a 10.1038/nature05258
|9 -- missing cx lookup --
|1 Abdul Ajees
|p 221 -
|2 Crossref
|t Nature
|v 444
|y 2006
999 C 5 |a 10.1016/j.pbiomolbio.2020.06.003
|9 -- missing cx lookup --
|1 Baldwin
|p 53 -
|2 Crossref
|t Prog. Biophys. Mol. Biol.
|v 160
|y 2021
999 C 5 |a 10.1038/nmeth.3541
|9 -- missing cx lookup --
|1 Barad
|p 943 -
|2 Crossref
|t Nat. Methods
|v 12
|y 2015
999 C 5 |a 10.1038/nsb1203-980
|9 -- missing cx lookup --
|1 Berman
|p 980 -
|2 Crossref
|t Nat. Struct. Mol. Biol.
|v 10
|y 2003
999 C 5 |a 10.1038/462970a
|9 -- missing cx lookup --
|1 Borrell
|p 970 -
|2 Crossref
|t Nature
|v 462
|y 2009
999 C 5 |a 10.1038/343687a0
|9 -- missing cx lookup --
|1 Brändén
|p 687 -
|2 Crossref
|t Nature
|v 343
|y 1990
999 C 5 |a 10.1038/355472a0
|9 -- missing cx lookup --
|1 Brünger
|p 472 -
|2 Crossref
|t Nature
|v 355
|y 1992
999 C 5 |a 10.1016/j.jsb.2013.08.002
|9 -- missing cx lookup --
|1 Cardone
|p 226 -
|2 Crossref
|t J. Struct. Biol.
|v 184
|y 2013
999 C 5 |a 10.1016/j.ultramic.2013.06.004
|9 -- missing cx lookup --
|1 Chen
|p 24 -
|2 Crossref
|t Ultramicroscopy
|v 135
|y 2013
999 C 5 |a 10.1093/nar/gkh398
|9 -- missing cx lookup --
|1 Davis
|p W615 -
|2 Crossref
|t Nucleic Acids Res.
|v 32
|y 2004
999 C 5 |a 10.1016/j.str.2017.10.009
|9 -- missing cx lookup --
|1 Gore
|p 1916 -
|2 Crossref
|t Structure
|v 25
|y 2017
999 C 5 |a 10.1107/S0907444911050359
|9 -- missing cx lookup --
|1 Gore
|p 478 -
|2 Crossref
|t Acta Cryst. D
|v 68
|y 2012
999 C 5 |1 Heel
|y 2013
|2 Crossref
|o Heel 2013
999 C 5 |a 10.1073/pnas.1314449110
|9 -- missing cx lookup --
|1 Henderson
|p 18037 -
|2 Crossref
|t Proc. Natl Acad. Sci. USA
|v 110
|y 2013
999 C 5 |a 10.1016/S0022-2836(05)80271-2
|9 -- missing cx lookup --
|1 Henderson
|p 899 -
|2 Crossref
|t J. Mol. Biol.
|v 213
|y 1990
999 C 5 |a 10.1016/j.str.2011.12.014
|9 -- missing cx lookup --
|1 Henderson
|p 205 -
|2 Crossref
|t Structure
|v 20
|y 2012
999 C 5 |a 10.1038/381272a0
|9 -- missing cx lookup --
|1 Hooft
|p 272 -
|2 Crossref
|t Nature
|v 381
|y 1996
999 C 5 |a 10.1038/nmeth.3806
|9 -- missing cx lookup --
|1 Iudin
|p 387 -
|2 Crossref
|t Nat. Methods
|v 13
|y 2016
999 C 5 |a 10.1093/nar/gkac1062
|9 -- missing cx lookup --
|1 Iudin
|p D1503 -
|2 Crossref
|t Nucleic Acids Res.
|v 51
|y 2023
999 C 5 |a 10.1107/S0108767390010224
|9 -- missing cx lookup --
|1 Jones
|p 110 -
|2 Crossref
|t Acta Cryst. A
|v 47
|y 1991
999 C 5 |a 10.1016/j.ymeth.2016.03.007
|9 -- missing cx lookup --
|1 Joseph
|p 42 -
|2 Crossref
|t Methods
|v 100
|y 2016
999 C 5 |a 10.1038/s41586-021-03819-2
|9 -- missing cx lookup --
|1 Jumper
|p 583 -
|2 Crossref
|t Nature
|v 596
|y 2021
999 C 5 |a 10.1006/jmbi.1997.1309
|9 -- missing cx lookup --
|1 Kleywegt
|p 371 -
|2 Crossref
|t J. Mol. Biol.
|v 273
|y 1997
999 C 5 |a 10.1107/S090744490900081X
|9 -- missing cx lookup --
|1 Kleywegt
|p 134 -
|2 Crossref
|t Acta Cryst. D
|v 65
|y 2009
999 C 5 |a 10.1107/S0907444904013253
|9 -- missing cx lookup --
|1 Kleywegt
|p 2240 -
|2 Crossref
|t Acta Cryst. D
|v 60
|y 2004
999 C 5 |a 10.1016/S0969-2126(01)00187-3
|9 -- missing cx lookup --
|1 Kleywegt
|p 535 -
|2 Crossref
|t Structure
|v 3
|y 1995
999 C 5 |a 10.1016/S0076-6879(97)77013-7
|9 -- missing cx lookup --
|1 Kleywegt
|p 208 -
|2 Crossref
|t Methods Enzymol.
|v 277
|y 1997
999 C 5 |a 10.1107/S0907444998007100
|9 -- missing cx lookup --
|1 Kleywegt
|p 1119 -
|2 Crossref
|t Acta Cryst. D
|v 54
|y 1998
999 C 5 |a 10.1038/nmeth.2727
|9 -- missing cx lookup --
|1 Kucukelbir
|p 63 -
|2 Crossref
|t Nat. Methods
|v 11
|y 2014
999 C 5 |a 10.1126/science.1251652
|9 -- missing cx lookup --
|1 Kühlbrandt
|p 1443 -
|2 Crossref
|t Science
|v 343
|y 2014
999 C 5 |a 10.1002/pro.5560050609
|9 -- missing cx lookup --
|1 Kuszewski
|p 1067 -
|2 Crossref
|t Protein Sci.
|v 5
|y 1996
999 C 5 |a 10.1006/jmre.1997.1116
|9 -- missing cx lookup --
|1 Kuszewski
|p 171 -
|2 Crossref
|t J. Magn. Reson.
|v 125
|y 1997
999 C 5 |a 10.1016/j.jsb.2013.09.021
|9 -- missing cx lookup --
|1 Lagerstedt
|p 173 -
|2 Crossref
|t J. Struct. Biol.
|v 184
|y 2013
999 C 5 |a 10.1107/S0021889892009944
|9 -- missing cx lookup --
|1 Laskowski
|p 283 -
|2 Crossref
|t J. Appl. Cryst.
|v 26
|y 1993
999 C 5 |a 10.1063/1.5138589
|9 -- missing cx lookup --
|1 Lawson
|p 014701 -
|2 Crossref
|t Struct. Dyn.
|v 7
|y 2020
999 C 5 |a 10.1016/j.jsb.2018.10.004
|9 -- missing cx lookup --
|1 Lawson
|p 523 -
|2 Crossref
|t J. Struct. Biol.
|v 204
|y 2018
999 C 5 |a 10.1038/s41592-020-01051-w
|9 -- missing cx lookup --
|1 Lawson
|p 156 -
|2 Crossref
|t Nat. Methods
|v 18
|y 2021
999 C 5 |a 10.1002/bip.22081
|9 -- missing cx lookup --
|1 Ludtke
|p 651 -
|2 Crossref
|t Biopolymers
|v 97
|y 2012
999 C 5 |a 10.1016/j.jsb.2015.04.003
|9 -- missing cx lookup --
|1 Marabini
|p 348 -
|2 Crossref
|t J. Struct. Biol.
|v 190
|y 2015
999 C 5 |a 10.1016/j.jsb.2016.02.008
|9 -- missing cx lookup --
|1 Marabini
|p 156 -
|2 Crossref
|t J. Struct. Biol.
|v 194
|y 2016
999 C 5 |a 10.1016/j.str.2013.07.021
|9 -- missing cx lookup --
|1 Montelione
|p 1563 -
|2 Crossref
|t Structure
|v 21
|y 2013
999 C 5 |a 10.1038/s41467-017-00782-3
|9 -- missing cx lookup --
|1 Naydenova
|p 629 -
|2 Crossref
|t Nat. Commun.
|v 8
|y 2017
999 C 5 |a 10.1107/S2059798318007313
|9 -- missing cx lookup --
|1 Nicholls
|p 492 -
|2 Crossref
|t Acta Cryst. D
|v 74
|y 2018
999 C 5 |a 10.1038/nsmb.2897
|9 -- missing cx lookup --
|1 Patwardhan
|p 841 -
|2 Crossref
|t Nat. Struct. Mol. Biol.
|v 21
|y 2014
999 C 5 |a 10.1038/nsmb.2426
|9 -- missing cx lookup --
|1 Patwardhan
|p 1203 -
|2 Crossref
|t Nat. Struct. Mol. Biol.
|v 19
|y 2012
999 C 5 |a 10.1038/s41592-020-0731-1
|9 -- missing cx lookup --
|1 Pintilie
|p 328 -
|2 Crossref
|t Nat. Methods
|v 17
|y 2020
999 C 5 |a 10.1002/pro.3786
|9 -- missing cx lookup --
|1 Prisant
|p 315 -
|2 Crossref
|t Protein Sci.
|v 29
|y 2020
999 C 5 |a 10.1016/j.str.2011.08.006
|9 -- missing cx lookup --
|1 Read
|p 1395 -
|2 Crossref
|t Structure
|v 19
|y 2011
999 C 5 |1 Subramaniam
|y 2013
|2 Crossref
|o Subramaniam 2013
999 C 5 |a 10.1016/S0968-0004(02)02176-X
|9 -- missing cx lookup --
|1 Tagari
|p 589 -
|2 Crossref
|t Trends Biochem. Sci.
|v 27
|y 2002
999 C 5 |a 10.1038/nmeth.4347
|9 -- missing cx lookup --
|1 Tan
|p 793 -
|2 Crossref
|t Nat. Methods
|v 14
|y 2017
999 C 5 |a 10.1107/S205979832300102X
|9 -- missing cx lookup --
|1 Terwilliger
|p 234 -
|2 Crossref
|t Acta Cryst. D
|v 79
|y 2023
999 C 5 |a 10.1038/s41586-021-03828-1
|9 -- missing cx lookup --
|1 Tunyasuvunakool
|p 590 -
|2 Crossref
|t Nature
|v 596
|y 2021
999 C 5 |a 10.1016/j.str.2018.03.011
|9 -- missing cx lookup --
|1 Vallat
|p 894 -
|2 Crossref
|t Structure
|v 26
|y 2018
999 C 5 |a 10.1016/j.str.2017.12.018
|9 -- missing cx lookup --
|1 Vilas
|p 337 -
|2 Crossref
|t Structure
|v 26
|y 2018
999 C 5 |a 10.1038/s41467-019-13742-w
|9 -- missing cx lookup --
|1 Vilas
|p 55 -
|2 Crossref
|t Nat. Commun.
|v 11
|y 2020
999 C 5 |a 10.1107/S205979832200328X
|9 -- missing cx lookup --
|1 Wang
|p 542 -
|2 Crossref
|t Acta Cryst. D
|v 78
|y 2022
999 C 5 |a 10.1016/j.jsb.2021.107826
|9 -- missing cx lookup --
|1 Warshamanage
|p 107826 -
|2 Crossref
|t J. Struct. Biol.
|v 214
|y 2021
999 C 5 |2 Crossref
|u Westbrook, J., Henrick, K., Ulrich, E. L. & Berman, H. M. (2005). International Tables for Crystallography, Vol. G, edited by S. R. Hall & B. McMahon, pp. 195-198. Springer: Dordrecht, The Netherlands.
999 C 5 |2 Crossref
|u wwPDB consortium. (2019). Nucleic Acids Res. 47, D520-D528.
999 C 5 |a 10.1093/nar/gkad1019
|9 -- missing cx lookup --
|2 Crossref
|u wwPDB consortium. (2024). Nucleic Acids Res. 52, D456-D465.
999 C 5 |a 10.1016/j.str.2017.01.004
|9 -- missing cx lookup --
|1 Young
|p 536 -
|2 Crossref
|t Structure
|v 25
|y 2017
999 C 5 |a 10.1016/j.jsb.2003.09.033
|9 -- missing cx lookup --
|1 Zhu
|p 3 -
|2 Crossref
|t J. Struct. Biol.
|v 145
|y 2004


LibraryCollectionCLSMajorCLSMinorLanguageAuthor
Marc 21