Journal Article

PUBDB-2025-02027

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png AlphaPulldown2—a general pipeline for high-throughput structural modeling

Molodenskiy, D.CSSB* ; Maurer, V. J.CSSB* ; Yu, D.Extern*CSSB* ; Chojnowski, G. ; Bienert, S. ; Tauriello, G. ; Gilep, K. ; Schwede, T. ; Kosinski, J. (Corresponding author)

2025
Oxford Univ. Press Oxford

This record in other databases:  

Please use a persistent id in citations: doi:10.1093/bioinformatics/btaf115  doi:10.3204/PUBDB-2025-02027

Abstract: AlphaPulldown2 streamlines protein structural modeling by automating workflows, improving code adaptability, and optimizing data management for large-scale applications. It introduces an automated Snakemake pipeline, compressed data storage, support for additional modeling backends like UniFold and AlphaLink2, and a range of other improvements. These upgrades make AlphaPulldown2 a versatile platform for predicting both binary interactions and complex multi-unit assemblies.

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Contributing Institute(s):

1. CSSB-EMBL-JK (CSSB-EMBL-JK)

Research Program(s):

1. 899 - ohne Topic (POF4-899) (POF4-899)

Experiment(s):

1. No specific instrument

Appears in the scientific report 2025

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Database coverage:
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