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@ARTICLE{Irvine:617302,
author = {Irvine, Sarah C. and Lucas, Christian and Bootbool, Moral
and Galli, Silvia and Zeller-Plumhoff, Berit and Moosmann,
Julian P.},
editor = {Müller, Bert and Wang, Ge},
title = {{M}ulti-modal image registration and machine learning for
the generation of 3{D} virtual histology of bone implants},
journal = {Proceedings of SPIE},
volume = {13152},
issn = {0038-7355},
address = {Bellingham, Wash.},
publisher = {SPIE},
reportid = {PUBDB-2024-06688},
pages = {70},
year = {2024},
note = {Waiting for fulltext},
abstract = {In our correlative characterisation studies of
biodegradable and permanent metal bone implants, we have
performed both synchrotron-radiation microtomography
(SR-μCT) and histology on the same samples. Histological
staining is still the gold standard for tissue visualisation
yet requires multiple time-consuming sample preparation
steps (fixing, embedding, sectioning and staining) before
imaging is performed on individual slices, in contrast to
the non-invasive and 3D nature of tomography. In the process
of correlating the corresponding data sets, we are able to
combine advantages of both modalities by using machine
learning methods to generate artificially stained 3D virtual
histology datasets from SR-μCT datasets. For this we have
developed an automated registration tool to find and fit the
correct virtual tomographic plane to each histology slice.
Preliminary results are promising after training a modified
cycle generative adversarial network on our data, with two
different histological stainings.},
month = {Aug},
date = {2024-08-18},
organization = {Developments in X-Ray Tomography XV,
San Diego (United States), 18 Aug 2024
- 23 Aug 2024},
cin = {Hereon / DOOR ; HAS-User},
ddc = {620},
cid = {I:(DE-H253)Hereon-20210428 / I:(DE-H253)HAS-User-20120731},
pnm = {6G3 - PETRA III (DESY) (POF4-6G3) / 05D23CG1 -
Verbundprojekt 05D2022 - KI4D4E: Ein KI-basiertes Framework
für die Visualisierung und Auswertung der massiven
Datenmengen der 4D-Tomographie für Endanwender von
Beamlines. Teilprojekt 7. (BMBF-05D23CG1)},
pid = {G:(DE-HGF)POF4-6G3 / G:(DE-Ds200)BMBF-05D23CG1},
experiment = {EXP:(DE-H253)P-P05-20150101},
typ = {PUB:(DE-HGF)8 / PUB:(DE-HGF)16},
doi = {10.1117/12.3028465},
url = {https://bib-pubdb1.desy.de/record/617302},
}