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@ARTICLE{Bobkov:456273,
author = {Bobkov, S. A. and Teslyuk, A. B. and Baymukhametov, T. N.
and Pichkur, E. B. and Chesnokov, Yu. M. and Assalauova, D.
and Poyda, A. A. and Novikov, A. M. and Zolotarev, S. I. and
Ikonnikova, K. A. and Velikhov, V. E. and Vartanyants, I. A.
and Vasiliev, A. L. and Ilyin, V. A.},
title = {{A}dvances in {M}odern {I}nformation {T}echnologies for
{D}ata {A}nalysis in {CRYO}-{EM} and {XFEL} {E}xperiments},
journal = {Crystallography reports},
volume = {65},
number = {6},
issn = {1562-689X},
address = {Heidelberg},
publisher = {Springer Science + Business Media},
reportid = {PUBDB-2021-01424},
pages = {1081 - 1092},
year = {2020},
note = {Waiting for fulltext},
abstract = {A new approach to the organization of data pipelining in
cryo-electron microscopy (Cryo-EM) and X-ray free-electron
laser (XFEL) experiments is presented. This approach, based
on the progress in information technologies (IT) due to the
development of containerization techniques, allows one to
separate user’s work at the application level from the
developments of IT experts at the system and middleware
levels. A user must only perform two simple operations: pack
application packages in containers and write a workflow with
data processing logic in a standard format. Some examples of
containerized workflows for Cryo-EM and XFEL experiments on
study of the spatial structure of single biological
nanoobjects (viruses, macromolecules, etc.) are discussed.
Examples of program codes for installing applied packages in
Docker containers and examples of applied workflows written
in the high-level language CWL are presented at the site of
the project. The examples have comments, which may help an
IT-inexperienced researcher to gain an idea of how to
organize Docker containers and form CWL workflows for
Cryo-EM and XFEL data pipelining.},
cin = {FS-PS},
ddc = {530},
cid = {I:(DE-H253)FS-PS-20131107},
pnm = {6214 - Nanoscience and Materials for Information Technology
(POF3-621)},
pid = {G:(DE-HGF)POF3-6214},
experiment = {EXP:(DE-MLZ)NOSPEC-20140101},
typ = {PUB:(DE-HGF)16},
UT = {WOS:000619514900040},
doi = {10.1134/S1063774520060085},
url = {https://bib-pubdb1.desy.de/record/456273},
}