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@ARTICLE{Hoffmann:207418,
      author       = {Hoffmann, Falk and Vancea, Ioan and Kamat, Sanjay G. and
                      Strodel, Birgit},
      title        = {{P}rotein {S}tructure {P}rediction: {A}ssembly of
                      {S}econdary {S}tructure {E}lements by {B}asin-{H}opping},
      journal      = {ChemPhysChem},
      volume       = {15},
      number       = {15},
      issn         = {1439-4235},
      address      = {Weinheim},
      publisher    = {Wiley-VCH Verl.},
      reportid     = {PUBDB-2015-01328},
      pages        = {3378 - 3390},
      year         = {2014},
      note         = {(c) WILEY-VCH Verlag GmbH $\&$ Co. KGaA},
      abstract     = {The prediction of protein tertiary structure from primary
                      structure remains a challenging task. One possible approach
                      to this problem is the application of basin-hopping global
                      optimization combined with an all-atom force field. In this
                      work, the efficiency of basin-hopping is improved by
                      introducing an approach that derives tertiary structures
                      from the secondary structure assignments of individual
                      residues. This approach is termed secondary-to-tertiary
                      basin-hopping and benchmarked for three miniproteins:
                      trpzip, trp-cage and ER-10. For each of the three
                      miniproteins, the secondary-to-tertiary basin-hopping
                      approach successfully and reliably predicts their
                      three-dimensional structure. When it is applied to larger
                      proteins, correctly folded structures are obtained. It can
                      be concluded that the assembly of secondary structure
                      elements using basin-hopping is a promising tool for de novo
                      protein structure prediction.},
      cin          = {EMBL},
      ddc          = {540},
      cid          = {I:(DE-H253)EMBL-20120731},
      pnm          = {No facility / HGF program None (POF2-890)},
      pid          = {G:(DE-H253)POF2-HGF-No-Prog-20130405},
      experiment   = {EXP:(DE-MLZ)NOSPEC-20140101},
      typ          = {PUB:(DE-HGF)16},
      UT           = {WOS:000343801200021},
      pubmed       = {pmid:25056272},
      doi          = {10.1002/cphc.201402247},
      url          = {https://bib-pubdb1.desy.de/record/207418},
}